Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015819106.1_cds_XP_016499947.1_13821
CDS Infomation

[gene=LOC107818442] [db_xref=GeneID:107818442] [protein=factor of DNA methylation 1-like isoform X2] [protein_id=XP_016499947.1] [location=join(1646..2543,2953..3134,3372..3461,3686..3973,4112..4330,6686..6916)] [gbkey=CDS]
Sequence

ATGAGCAGCAGCTCAGATGAAGAGGTAGAGTTGAGTGACTCTGAGATTTATGAGTTCAAA
GAGAAGCCTTATGAAGAATTACGAACTGAAAAGCTGAGAGTGAAGGGTCCAAATGGGTCC
CTTAGATGTCCCTTCTGTGCAGGGAAGAAAAAACAAGACTACAAGTACAAGGACCTTCTT
CAACATGCTACAGGGGTTGGTAAAGGTTCTGCTAACCGAAGGGCTAAGCAGAAGGCAAAC
CATTTGGCTCTTGCAAAGTATCTGCAAACAGACCTAGTAAATGAGGTTGAGCCAATACCT
GCACGTGCTGTGACACCAGAACGTTCAGAACCTGAAAAAACTGAACTGTTCTGTTGGCCT
TGGACTGGGGTTGTCGTTAATATATCAAAGGAAGCAGCAAATGGCAGATCTCTAGACGAT
AAGGAGTACTGGTTGAGAAAGTTTTCCATCTATATACCTTCGGAAGCCAAGTTTTTCTAT
GATAACCAAGCTAGGGTTTCCGAAGCTATTGTGAGGTTCAATAGTGATTGGACTGGTTTT
AAGGGTGCAATGGAGTTCGAGATGTCCTTCGAAACCTCTCACTGCAGCAAACGAGAATGG
AAAGCCGATAGAAGTTGCCCTGGTCCAAATATTTATGGATGGGTTGCTCGAGAAGATGAT
TATATAGCAGAAGGGGCTGTAGGAGAATACCTGCGAGAGAAGGGGAAGTTGAAGAAGATA
TCTGACCTAATTAATGAAGAAACACATGATAAAAAGAAGGTTGTAGCAAATCTAGCCAAT
GAAATTGACATGAAAAATGAAAATCTGGATGAGCTACAGACAAGATTCAATTTGAATACG
CTATCTCTTAGTCAGATGCTTGAGGAGAAAGACATGCTACACCATGCTTTCTTTGAAGAA
TCAAGGAAGATGCAACGCCTTGCACGTGAGCATGTACAGAAGGTCCTGCTAGAGCAGGAA
ATGTTAAGTGTAGAGTTGGAGAGCAAGAAGAAGAAGCTTGATGCTTGGAGCAGAGAACTG
AATAAACGTGAAGCCTTAACTGAGCGAGAAAAGCAAAAGCTTGATGATGAGAAGAAACAG
AATGATGAGAGAAATTCAGCACTTCAAATGGCTTCTGTGGAACAAAGAAAAGCTGATGAG
AATGTCTTAAGACTGGTCGAAGAACAAAAGAGGGAGAAGGAGAAAGCCTTGAGAAAGATA
CTTGAGCTAGAAAGGGAAATAGATGCCAGGCAAAAACTGGAAATGGAAATAGCAGAATTT
AAAGGAAAACTAGAGGTTATGAAGCACCTTGGAAGCAATGATGATGCAGCTGTACAAAAT
AAGATTAAGGAGATGAACGAGGAGCTGAAACAGAAAATGGAGGAGATGGATGATATGGAG
TCCCTGAATCAGACTCTCCTTGCAAAGGAGCGCCAAAGTAATGATGAGTTGCAAGATGCA
CGGCACGCCTTAATTGATGGATTGAAAGAGATGTTGACCAGTGGACGCTCCCAAATTGGG
ATAAAAAGAATGGGGGAAATTGATGCAAAGGCCTTTCAGAATGCATTGAAGCAGAGGTTA
CCAAGTGCGGAAGCTGACATCAAGGCATTGGAACTGTGTTCCCTGTGGCAGGAAAAACTA
AAAGCCCAAGACTGGCATCCCTTTAAAACTGTTATGGTTGATGAGTCGCGTGTGGAGAGA
GTGATAGATGAGAATGATGAAGCATTAGAAAAACTGAAGGAGGAATGGGGGGATGAAATC
TACAATGCGGTGACTACAGCTCTGAAGGAGATAGAGGAATACAATCCTAGTGGTAGGTAC
ATAATTAATGAGCTATGGAATTTCAAGGAAGGAAGGAAGGCCACGCTGAAGGAAGTTACC
AGCTATATTTTCAAGCAATTGAAGACACATAAGCGCAAGAGACCATGA

Peptide Sequence

PEP ID

XP_016499947.1
PEP Infomation

PREDICTED: factor of DNA methylation 1-like isoform X2 [Nicotiana tabacum]
Sequence

MSSSSDEEVELSDSEIYEFKEKPYEELRTEKLRVKGPNGSLRCPFCAGKKKQDYKYKDLL
QHATGVGKGSANRRAKQKANHLALAKYLQTDLVNEVEPIPARAVTPERSEPEKTELFCWP
WTGVVVNISKEAANGRSLDDKEYWLRKFSIYIPSEAKFFYDNQARVSEAIVRFNSDWTGF
KGAMEFEMSFETSHCSKREWKADRSCPGPNIYGWVAREDDYIAEGAVGEYLREKGKLKKI
SDLINEETHDKKKVVANLANEIDMKNENLDELQTRFNLNTLSLSQMLEEKDMLHHAFFEE
SRKMQRLAREHVQKVLLEQEMLSVELESKKKKLDAWSRELNKREALTEREKQKLDDEKKQ
NDERNSALQMASVEQRKADENVLRLVEEQKREKEKALRKILELEREIDARQKLEMEIAEF
KGKLEVMKHLGSNDDAAVQNKIKEMNEELKQKMEEMDDMESLNQTLLAKERQSNDELQDA
RHALIDGLKEMLTSGRSQIGIKRMGEIDAKAFQNALKQRLPSAEADIKALELCSLWQEKL
KAQDWHPFKTVMVDESRVERVIDENDEALEKLKEEWGDEIYNAVTTALKEIEEYNPSGRY
IINELWNFKEGRKATLKEVTSYIFKQLKTHKRKRP

Transcript Sequence

Gene sequence data has not been registered.